Sourdough Lemon Poppy Seed Muffins

Sourdough Lemon Poppy Seed Muffins! These sourdough lemon poppyseed muffins are one of my most favorite sourdough discard muffin recipes! Light, fluffy and the perfect balance of tangy and sweet. And what's even better is that I made these with healthy ingredients!

If you love making sourdough muffin recipes, you have to try out these easy sourdough discard lemon poppy seed muffins! They are an excellent, no waste way to use up your extra sourdough starter. And there really is nothing better than your family walking in to the smell of freshly baked muffins.

My Healthy Sourdough Lemon Poppy Seed Muffins Recipe is:

• Easy to make!
• Perfect use of sourdough starter
• Light & fluffy
• Filled with lemon flavor
• Dairy free
• Healthy for the whole family!

Think sourdough is complicated? It doesn’t have to be! My Beginner Friendly Sourdough Guide walks you through a simple, no discard method for creating a sourdough starter and baking your first loaf! Plus, it's packed with gut friendly benefits thanks to natural fermentation.

SOURDOUGH LEMON POPPY SEED MUFFINS INGREDIENTS

I made my lemon poppy seed muffins with sourdough discard and all healthy ingredients that make these the perfect healthy snack or treat!

• 1 cup sourdough discard
• ⅓ cup pure maple syrup or honey
• ⅓ cup avocado oil or melted coconut oil
• 2 large eggs
• 2 teaspoons pure vanilla extract
• Zest of 1 large lemon
• ¼ cup fresh lemon juice
• ¾ cup flour (all-purpose, white wheat, whole wheat, or 1:1 gluten-free)
• 2 teaspoons baking powder (aluminum-free)
• ½ teaspoon baking soda
• ½ teaspoon salt
• 2 tablespoons poppy seeds

GUT HEALTHY BENEFITS OF MY SOURDOUGH DISCARD LEMON POPPY SEED MUFFINS

These lemon poppy seed muffins aren’t just light, fluffy, and delicious—they also come with gut-friendly benefits thanks to the sourdough discard and wholesome ingredients!

Here’s why they’re great for digestion and overall gut health:

• Rich in Prebiotics – Sourdough discard contains fermented starches and fibers that act as prebiotics, feeding the good bacteria in your gut and promoting a healthy microbiome.
• Easier to Digest – The natural fermentation in sourdough helps break down gluten and phytic acid, making these muffins gentler on digestion compared to traditional baked goods.
• Naturally Sweetened – Using honey or maple syrup instead of refined sugar helps prevent blood sugar spikes, which can disrupt gut balance and cause inflammation.
• Lemon for Digestive Support – Fresh lemon juice and zest provide vitamin C and antioxidants, which help stimulate digestion and support a healthy gut lining.
• Healthy Fats for Gut Absorption – Avocado or coconut oil in these muffins provides nourishing fats that help absorb fat-soluble vitamins and keep your digestive system running smoothly.

Enjoy these healthy sourdough lemon poppy seed muffins as a delicious, gut-friendly treat that supports digestion while satisfying your lemony cravings!

TIPS FOR MAKING THE BEST SOURDOUGH LEMON POPPY SEED MUFFIN RECIPE

PREHEAT OVEN. A properly heated oven is key to good baked goods!

START BY MELTING YOUR COCONUT OIL. I also start by melting my ⅓ cup of coconut oil so it has time to cool a bit before mixing it in the batter. Too hot coconut oil can start to cook your eggs!

MIX YOUR BATTER TILL JUST COMBINED. Don't over mix your batter. Over mixing can leave you with a dense and chewy muffin texture instead of light and fluffy lemon poppy seed sourdough muffins.

COOL COMPLETELY BEFORE GLAZING. If they are not totally cold, the glaze will melt right off.

HOW TO MAKE HEALTHY SOURDOUGH DISCARD LEMON POPPYSEED MUFFINS

These lemon poppy seed muffins are light, fluffy, and bursting with citrus flavor—all while using sourdough discard for extra depth and gut-friendly benefits. Naturally sweetened and made with wholesome ingredients, they’re the perfect healthy treat for breakfast or a snack! Let's get started!

Get started by preheating your oven to 350 degrees Fahrenheit with the rack set at the center position and line a muffin tin with 12 liners.

In a large bowl, whisk together the wet ingredients until smooth:

• 1 cup sourdough discard
• ⅓ cup pure maple syrup or honey
• ⅓ cup avocado oil or melted coconut oil
• 2 large eggs
• 2 teaspoons pure vanilla extract
• zest of 1 large lemon
• ¼ cup fresh lemon juice

In a separate bowl, sift together the dry ingredients:

• ¾ cup flour (all-purpose, white wheat, whole wheat, or 1:1 gluten-free)
• 2 teaspoons baking powder (aluminum free)
• ½ teaspoon baking soda
• ½ teaspoon sea salt
• 2 tablespoon poppy seeds

Gently fold the dry ingredients into the wet mixture until just combined—do not overmix or you can be left with more dense and chewy muffins!

Divide batter evenly into muffin cups, filling about ¾ full.

Bake for 18-22 minutes in your preheated oven, or until a toothpick inserted in the center comes out clean.

Let muffins cool for 5 minutes in the pan, then transfer to a wire rack.

3 ways to tell if your muffins are done baking:

1. The tops will be cracked
2. A toothpick or knife inserted into the center will come out clean
3. The top will spring back when gently pressed

HOW TO MAKE HEALTHY LEMON GLAZE FOR LEMON MUFFINS

Allow your muffins to cool on a wire baking rack before adding the healthy lemon glaze.

The healthy lemon glaze is so easy to make! All you have to do is whisk together 2 tablespoons of honey with 1-2 tablespoons fresh lemon juice. If you like a lot of glaze you can double this!

Use a pastry brush to brush the healthy glaze on top of your cooled sourdough lemon poppy seed muffins!

Enjoy these delicious and beautiful lemon poppy seed muffins with sourdough discard and all healthy ingredients!

STORAGE

Store sourdough discard lemon poppy seed muffins at room temperature for up to 3 days in an airtight container or in the fridge for up to a week.

You can also freeze them for up to 3 months—just thaw at room temperature or warm in the oven before serving.

FAQ'S

Frequently asked questions about making delicious fluffy sourdough lemon poppy seed muffins with coconut oil.

1. Can I make these muffins dairy-free?
Yes! This sourdough lemon poppy seed muffin recipe is already dairy-free, but if you want extra moisture, you can add 2-3 tablespoons of dairy-free yogurt or almond milk without affecting the texture.

2. What can I use instead of eggs?
For an egg-free version, replace each egg with 1 flax egg (1 tablespoon ground flaxseed + 2.5 tablespoons water, let sit for 5 minutes). The muffins may be slightly denser but still delicious!

3. Can I use whole wheat flour instead of all-purpose flour?
Yes! You can substitute white whole wheat flour or whole wheat pastry flour for a more wholesome option. If using regular whole wheat flour, the muffins may be a bit denser—so consider adding an extra tablespoon of lemon juice for added moisture.

4. What does sourdough discard do in this recipe?
Sourdough discard adds a subtle tangy flavor, natural leavening, and gut-friendly benefits due to its prebiotic and probiotic content. It also helps break down gluten, making the muffins easier to digest!

More Healthy Homemade Muffin Recipes you're going to love!

• Sourdough Discard Banana Muffins
• Sourdough Discard Banana Oatmeal Muffins
• Sourdough Discard Chocolate Chip Banana Muffins
• Sourdough Discard Chocolate Banana Muffins
• Sourdough Discard Chocolate Banana Zucchini Muffins
• Sourdough Discard Nutella Banana Muffins
• Sourdough Discard Blueberry Muffins
• Sourdough Discard Strawberry Banana Muffins
• Healthy Pumpkin Chocolate Chip Muffins
• Apple Cinnamon Oatmeal Muffins
• Banana Almond Pulp Muffins

If you try this Healthy Sourdough Lemon Poppy Seed Muffin Recipe, please let me know your thoughts by leaving a rating and comment below! Ready for more? Subscribe to my newsletter or follow along on Pinterest, Instagram, Facebook, and Youtube!